PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006251
Common NameLOC102596373
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 248aa    MW: 27650.6 Da    PI: 8.5896
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006251genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-20126160135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  PGSC0003DMP400006251 126 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 160
                           ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.89120156IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-19120172IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-13123161No hitNo description
Gene3DG3DSA:3.30.50.103.4E-17124160IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.53E-13125157No hitNo description
PROSITE patternPS003440126151IPR000679Zinc finger, GATA-type
PfamPF003205.6E-18126160IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MMHRCSGSMV GPCSCGLFHN QTGSTTSSSA FSMLFSHEYS ENMYSFAPSS VDCTLSLGTP  60
STRLINDDNH EKRSSNNHER RRSSSNCMSN FWDILHPRQH LTTPPSKSTR APNNNSTTDP  120
LVARRCANCD TTSTPLWRNG PRGPKSLCNA CGIRFKKEER RASAAAATAN GGGRMETTTH  180
QHWVHHHHHS QPTKMPCFSS ATYGNEFRFI EDNEHHRDSD AAATAIPFFP WRLNVADRPS  240
LVHDFTR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340931.10.0PREDICTED: GATA transcription factor 19-like
SwissprotQ8LC794e-61GAT18_ARATH; GATA transcription factor 18
TrEMBLM0ZVG90.0M0ZVG9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000090310.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.12e-49GATA family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]